#================================================== #All numbers are READ count #================================================== Total records: 66505419 QC failed: 0 Optical/PCR duplicate: 41323099 Non primary hits 4287957 Unmapped reads: 1130136 mapq < mapq_cut (non-unique): 867222 mapq >= mapq_cut (unique): 18897005 Read-1: 9449054 Read-2: 9447951 Reads map to '+': 9448467 Reads map to '-': 9448538 Non-splice reads: 13252505 Splice reads: 5644500 Reads mapped in proper pairs: 18894614 Proper-paired reads map to different chrom:0