#================================================== #All numbers are READ count #================================================== Total records: 100799384 QC failed: 0 Optical/PCR duplicate: 39347722 Non primary hits 5818490 Unmapped reads: 3871977 mapq < mapq_cut (non-unique): 2102235 mapq >= mapq_cut (unique): 49658960 Read-1: 24831657 Read-2: 24827303 Reads map to '+': 24829400 Reads map to '-': 24829560 Non-splice reads: 36006136 Splice reads: 13652824 Reads mapped in proper pairs: 49649228 Proper-paired reads map to different chrom:0