#================================================== #All numbers are READ count #================================================== Total records: 259587301 QC failed: 0 Optical/PCR duplicate: 176973235 Non primary hits 20802245 Unmapped reads: 11235276 mapq < mapq_cut (non-unique): 2577329 mapq >= mapq_cut (unique): 47999216 Read-1: 24001263 Read-2: 23997953 Reads map to '+': 23999583 Reads map to '-': 23999633 Non-splice reads: 34686258 Splice reads: 13312958 Reads mapped in proper pairs: 47990162 Proper-paired reads map to different chrom:0