#================================================== #All numbers are READ count #================================================== Total records: 115480025 QC failed: 0 Optical/PCR duplicate: 43030098 Non primary hits 6050195 Unmapped reads: 5658446 mapq < mapq_cut (non-unique): 2336786 mapq >= mapq_cut (unique): 58404500 Read-1: 29205036 Read-2: 29199464 Reads map to '+': 29202299 Reads map to '-': 29202201 Non-splice reads: 40276476 Splice reads: 18128024 Reads mapped in proper pairs: 58392222 Proper-paired reads map to different chrom:0