#================================================== #All numbers are READ count #================================================== Total records: 101975425 QC failed: 0 Optical/PCR duplicate: 77068973 Non primary hits 6644435 Unmapped reads: 2447362 mapq < mapq_cut (non-unique): 887513 mapq >= mapq_cut (unique): 14927142 Read-1: 7464116 Read-2: 7463026 Reads map to '+': 7463588 Reads map to '-': 7463554 Non-splice reads: 10157937 Splice reads: 4769205 Reads mapped in proper pairs: 14921396 Proper-paired reads map to different chrom:0