#================================================== #All numbers are READ count #================================================== Total records: 65561756 QC failed: 0 Optical/PCR duplicate: 18211618 Non primary hits 3721128 Unmapped reads: 1267935 mapq < mapq_cut (non-unique): 1667047 mapq >= mapq_cut (unique): 40694028 Read-1: 20348851 Read-2: 20345177 Reads map to '+': 20346939 Reads map to '-': 20347089 Non-splice reads: 28580937 Splice reads: 12113091 Reads mapped in proper pairs: 40687176 Proper-paired reads map to different chrom:0