#================================================== #All numbers are READ count #================================================== Total records: 116034460 QC failed: 0 Optical/PCR duplicate: 67307864 Non primary hits 12700364 Unmapped reads: 2699334 mapq < mapq_cut (non-unique): 1537142 mapq >= mapq_cut (unique): 31789756 Read-1: 15895591 Read-2: 15894165 Reads map to '+': 15894848 Reads map to '-': 15894908 Non-splice reads: 22151125 Splice reads: 9638631 Reads mapped in proper pairs: 31784618 Proper-paired reads map to different chrom:0