#================================================== #All numbers are READ count #================================================== Total records: 76430060 QC failed: 0 Optical/PCR duplicate: 28295132 Non primary hits 4987096 Unmapped reads: 1688861 mapq < mapq_cut (non-unique): 1820350 mapq >= mapq_cut (unique): 39638621 Read-1: 19820474 Read-2: 19818147 Reads map to '+': 19819247 Reads map to '-': 19819374 Non-splice reads: 27547908 Splice reads: 12090713 Reads mapped in proper pairs: 39634020 Proper-paired reads map to different chrom:0