#================================================== #All numbers are READ count #================================================== Total records: 96790088 QC failed: 0 Optical/PCR duplicate: 43120563 Non primary hits 6117568 Unmapped reads: 4295981 mapq < mapq_cut (non-unique): 1950857 mapq >= mapq_cut (unique): 41305119 Read-1: 20654442 Read-2: 20650677 Reads map to '+': 20652568 Reads map to '-': 20652551 Non-splice reads: 28371209 Splice reads: 12933910 Reads mapped in proper pairs: 41298182 Proper-paired reads map to different chrom:0