#================================================== #All numbers are READ count #================================================== Total records: 90591801 QC failed: 0 Optical/PCR duplicate: 34541097 Non primary hits 4801689 Unmapped reads: 2855393 mapq < mapq_cut (non-unique): 1945366 mapq >= mapq_cut (unique): 46448256 Read-1: 23226517 Read-2: 23221739 Reads map to '+': 23224101 Reads map to '-': 23224155 Non-splice reads: 31058837 Splice reads: 15389419 Reads mapped in proper pairs: 46441184 Proper-paired reads map to different chrom:0