#================================================== #All numbers are READ count #================================================== Total records: 55554006 QC failed: 0 Optical/PCR duplicate: 25174664 Non primary hits 7057732 Unmapped reads: 1368460 mapq < mapq_cut (non-unique): 1271224 mapq >= mapq_cut (unique): 20681926 Read-1: 10341832 Read-2: 10340094 Reads map to '+': 10340957 Reads map to '-': 10340969 Non-splice reads: 14600705 Splice reads: 6081221 Reads mapped in proper pairs: 20677930 Proper-paired reads map to different chrom:0