#================================================== #All numbers are READ count #================================================== Total records: 84770233 QC failed: 0 Optical/PCR duplicate: 33557560 Non primary hits 4250805 Unmapped reads: 3045629 mapq < mapq_cut (non-unique): 1671016 mapq >= mapq_cut (unique): 42245223 Read-1: 21124147 Read-2: 21121076 Reads map to '+': 21122567 Reads map to '-': 21122656 Non-splice reads: 29769010 Splice reads: 12476213 Reads mapped in proper pairs: 42239596 Proper-paired reads map to different chrom:0