#================================================== #All numbers are READ count #================================================== Total records: 138011748 QC failed: 0 Optical/PCR duplicate: 53250337 Non primary hits 18209384 Unmapped reads: 24589517 mapq < mapq_cut (non-unique): 2135709 mapq >= mapq_cut (unique): 39826801 Read-1: 19926127 Read-2: 19900674 Reads map to '+': 19913195 Reads map to '-': 19913606 Non-splice reads: 28352627 Splice reads: 11474174 Reads mapped in proper pairs: 39787030 Proper-paired reads map to different chrom:0