#================================================== #All numbers are READ count #================================================== Total records: 105421519 QC failed: 0 Optical/PCR duplicate: 52799534 Non primary hits 7165491 Unmapped reads: 3847554 mapq < mapq_cut (non-unique): 1853656 mapq >= mapq_cut (unique): 39755284 Read-1: 19879077 Read-2: 19876207 Reads map to '+': 19877619 Reads map to '-': 19877665 Non-splice reads: 29896681 Splice reads: 9858603 Reads mapped in proper pairs: 39747576 Proper-paired reads map to different chrom:0