#================================================== #All numbers are READ count #================================================== Total records: 155378007 QC failed: 0 Optical/PCR duplicate: 63510510 Non primary hits 8582471 Unmapped reads: 2996254 mapq < mapq_cut (non-unique): 3028241 mapq >= mapq_cut (unique): 77260531 Read-1: 38634112 Read-2: 38626419 Reads map to '+': 38630172 Reads map to '-': 38630359 Non-splice reads: 49925367 Splice reads: 27335164 Reads mapped in proper pairs: 77249308 Proper-paired reads map to different chrom:0