#================================================== #All numbers are READ count #================================================== Total records: 84506323 QC failed: 0 Optical/PCR duplicate: 38574979 Non primary hits 5738027 Unmapped reads: 3729815 mapq < mapq_cut (non-unique): 1614212 mapq >= mapq_cut (unique): 34849290 Read-1: 17425573 Read-2: 17423717 Reads map to '+': 17424554 Reads map to '-': 17424736 Non-splice reads: 25512822 Splice reads: 9336468 Reads mapped in proper pairs: 34844648 Proper-paired reads map to different chrom:0