#================================================== #All numbers are READ count #================================================== Total records: 93270880 QC failed: 0 Optical/PCR duplicate: 32176328 Non primary hits 5011940 Unmapped reads: 2996667 mapq < mapq_cut (non-unique): 2101260 mapq >= mapq_cut (unique): 50984685 Read-1: 25495261 Read-2: 25489424 Reads map to '+': 25492234 Reads map to '-': 25492451 Non-splice reads: 34887776 Splice reads: 16096909 Reads mapped in proper pairs: 50976174 Proper-paired reads map to different chrom:0