#================================================== #All numbers are READ count #================================================== Total records: 94933969 QC failed: 0 Optical/PCR duplicate: 42999858 Non primary hits 7060271 Unmapped reads: 2328623 mapq < mapq_cut (non-unique): 1860644 mapq >= mapq_cut (unique): 40684573 Read-1: 20343631 Read-2: 20340942 Reads map to '+': 20342279 Reads map to '-': 20342294 Non-splice reads: 30136141 Splice reads: 10548432 Reads mapped in proper pairs: 40678620 Proper-paired reads map to different chrom:0