#================================================== #All numbers are READ count #================================================== Total records: 116573651 QC failed: 0 Optical/PCR duplicate: 58471800 Non primary hits 7967289 Unmapped reads: 3291346 mapq < mapq_cut (non-unique): 1996868 mapq >= mapq_cut (unique): 44846348 Read-1: 22424429 Read-2: 22421919 Reads map to '+': 22423115 Reads map to '-': 22423233 Non-splice reads: 33912159 Splice reads: 10934189 Reads mapped in proper pairs: 44839820 Proper-paired reads map to different chrom:0