#================================================== #All numbers are READ count #================================================== Total records: 115936034 QC failed: 0 Optical/PCR duplicate: 66377703 Non primary hits 8481966 Unmapped reads: 2217064 mapq < mapq_cut (non-unique): 1702636 mapq >= mapq_cut (unique): 37156665 Read-1: 18579597 Read-2: 18577068 Reads map to '+': 18578326 Reads map to '-': 18578339 Non-splice reads: 28483533 Splice reads: 8673132 Reads mapped in proper pairs: 37150320 Proper-paired reads map to different chrom:0