#================================================== #All numbers are READ count #================================================== Total records: 69741819 QC failed: 0 Optical/PCR duplicate: 33739222 Non primary hits 3813545 Unmapped reads: 911743 mapq < mapq_cut (non-unique): 1183379 mapq >= mapq_cut (unique): 30093930 Read-1: 15047687 Read-2: 15046243 Reads map to '+': 15046966 Reads map to '-': 15046964 Non-splice reads: 21280880 Splice reads: 8813050 Reads mapped in proper pairs: 30090608 Proper-paired reads map to different chrom:0