#================================================== #All numbers are READ count #================================================== Total records: 65489472 QC failed: 0 Optical/PCR duplicate: 23501739 Non primary hits 3260126 Unmapped reads: 3859059 mapq < mapq_cut (non-unique): 1331358 mapq >= mapq_cut (unique): 33537190 Read-1: 16770158 Read-2: 16767032 Reads map to '+': 16768567 Reads map to '-': 16768623 Non-splice reads: 24420694 Splice reads: 9116496 Reads mapped in proper pairs: 33531094 Proper-paired reads map to different chrom:0