#================================================== #All numbers are READ count #================================================== Total records: 74803198 QC failed: 0 Optical/PCR duplicate: 25227757 Non primary hits 4199652 Unmapped reads: 1433794 mapq < mapq_cut (non-unique): 1748144 mapq >= mapq_cut (unique): 42193851 Read-1: 21098811 Read-2: 21095040 Reads map to '+': 21096926 Reads map to '-': 21096925 Non-splice reads: 29809772 Splice reads: 12384079 Reads mapped in proper pairs: 42187518 Proper-paired reads map to different chrom:0