#================================================== #All numbers are READ count #================================================== Total records: 110190714 QC failed: 0 Optical/PCR duplicate: 44486436 Non primary hits 7691854 Unmapped reads: 2796648 mapq < mapq_cut (non-unique): 2374209 mapq >= mapq_cut (unique): 52841567 Read-1: 26422485 Read-2: 26419082 Reads map to '+': 26420693 Reads map to '-': 26420874 Non-splice reads: 36511264 Splice reads: 16330303 Reads mapped in proper pairs: 52834592 Proper-paired reads map to different chrom:0