#================================================== #All numbers are READ count #================================================== Total records: 85873735 QC failed: 0 Optical/PCR duplicate: 33220792 Non primary hits 4985981 Unmapped reads: 2608366 mapq < mapq_cut (non-unique): 1828146 mapq >= mapq_cut (unique): 43230450 Read-1: 21617368 Read-2: 21613082 Reads map to '+': 21615257 Reads map to '-': 21615193 Non-splice reads: 30391879 Splice reads: 12838571 Reads mapped in proper pairs: 43223980 Proper-paired reads map to different chrom:0