#================================================== #All numbers are READ count #================================================== Total records: 406862894 QC failed: 0 Optical/PCR duplicate: 284978440 Non primary hits 34004418 Unmapped reads: 14198237 mapq < mapq_cut (non-unique): 3379173 mapq >= mapq_cut (unique): 70302626 Read-1: 35160355 Read-2: 35142271 Reads map to '+': 35151145 Reads map to '-': 35151481 Non-splice reads: 50430623 Splice reads: 19872003 Reads mapped in proper pairs: 70272012 Proper-paired reads map to different chrom:0