#================================================== #All numbers are READ count #================================================== Total records: 123555777 QC failed: 0 Optical/PCR duplicate: 41841336 Non primary hits 18875613 Unmapped reads: 15271464 mapq < mapq_cut (non-unique): 2572290 mapq >= mapq_cut (unique): 44995074 Read-1: 22502276 Read-2: 22492798 Reads map to '+': 22497494 Reads map to '-': 22497580 Non-splice reads: 29373935 Splice reads: 15621139 Reads mapped in proper pairs: 44978740 Proper-paired reads map to different chrom:0