#================================================== #All numbers are READ count #================================================== Total records: 84212755 QC failed: 0 Optical/PCR duplicate: 22963758 Non primary hits 4861409 Unmapped reads: 9356718 mapq < mapq_cut (non-unique): 2078568 mapq >= mapq_cut (unique): 44952302 Read-1: 22479691 Read-2: 22472611 Reads map to '+': 22476042 Reads map to '-': 22476260 Non-splice reads: 29569369 Splice reads: 15382933 Reads mapped in proper pairs: 44942428 Proper-paired reads map to different chrom:0