#================================================== #All numbers are READ count #================================================== Total records: 80276982 QC failed: 0 Optical/PCR duplicate: 30649232 Non primary hits 4620090 Unmapped reads: 3374095 mapq < mapq_cut (non-unique): 1707679 mapq >= mapq_cut (unique): 39925886 Read-1: 19964957 Read-2: 19960929 Reads map to '+': 19962960 Reads map to '-': 19962926 Non-splice reads: 28579857 Splice reads: 11346029 Reads mapped in proper pairs: 39918868 Proper-paired reads map to different chrom:0