#================================================== #All numbers are READ count #================================================== Total records: 108453355 QC failed: 0 Optical/PCR duplicate: 63663143 Non primary hits 8491805 Unmapped reads: 3282692 mapq < mapq_cut (non-unique): 1644894 mapq >= mapq_cut (unique): 31370821 Read-1: 15686300 Read-2: 15684521 Reads map to '+': 15685401 Reads map to '-': 15685420 Non-splice reads: 22905334 Splice reads: 8465487 Reads mapped in proper pairs: 31363646 Proper-paired reads map to different chrom:0