#================================================== #All numbers are READ count #================================================== Total records: 164094541 QC failed: 0 Optical/PCR duplicate: 95129566 Non primary hits 11151455 Unmapped reads: 4123807 mapq < mapq_cut (non-unique): 2270768 mapq >= mapq_cut (unique): 51418945 Read-1: 25711351 Read-2: 25707594 Reads map to '+': 25709363 Reads map to '-': 25709582 Non-splice reads: 36725088 Splice reads: 14693857 Reads mapped in proper pairs: 51410558 Proper-paired reads map to different chrom:0