#================================================== #All numbers are READ count #================================================== Total records: 84334523 QC failed: 0 Optical/PCR duplicate: 53449209 Non primary hits 5208667 Unmapped reads: 1853064 mapq < mapq_cut (non-unique): 1033034 mapq >= mapq_cut (unique): 22790549 Read-1: 11396132 Read-2: 11394417 Reads map to '+': 11395268 Reads map to '-': 11395281 Non-splice reads: 16136290 Splice reads: 6654259 Reads mapped in proper pairs: 22787260 Proper-paired reads map to different chrom:0