#================================================== #All numbers are READ count #================================================== Total records: 130632906 QC failed: 0 Optical/PCR duplicate: 68007826 Non primary hits 21397316 Unmapped reads: 3512865 mapq < mapq_cut (non-unique): 2243210 mapq >= mapq_cut (unique): 35471689 Read-1: 17737483 Read-2: 17734206 Reads map to '+': 17735845 Reads map to '-': 17735844 Non-splice reads: 25809591 Splice reads: 9662098 Reads mapped in proper pairs: 35463730 Proper-paired reads map to different chrom:0