#================================================== #All numbers are READ count #================================================== Total records: 109217250 QC failed: 0 Optical/PCR duplicate: 66762854 Non primary hits 10697016 Unmapped reads: 6293870 mapq < mapq_cut (non-unique): 1264249 mapq >= mapq_cut (unique): 24199261 Read-1: 12100807 Read-2: 12098454 Reads map to '+': 12099594 Reads map to '-': 12099667 Non-splice reads: 19190398 Splice reads: 5008863 Reads mapped in proper pairs: 24190388 Proper-paired reads map to different chrom:0