#================================================== #All numbers are READ count #================================================== Total records: 102159712 QC failed: 0 Optical/PCR duplicate: 52503707 Non primary hits 7123050 Unmapped reads: 5872927 mapq < mapq_cut (non-unique): 1658846 mapq >= mapq_cut (unique): 35001182 Read-1: 17504321 Read-2: 17496861 Reads map to '+': 17500607 Reads map to '-': 17500575 Non-splice reads: 26756628 Splice reads: 8244554 Reads mapped in proper pairs: 34987722 Proper-paired reads map to different chrom:0