#================================================== #All numbers are READ count #================================================== Total records: 112315797 QC failed: 0 Optical/PCR duplicate: 45767536 Non primary hits 6331361 Unmapped reads: 4942102 mapq < mapq_cut (non-unique): 2262387 mapq >= mapq_cut (unique): 53012411 Read-1: 26508877 Read-2: 26503534 Reads map to '+': 26506189 Reads map to '-': 26506222 Non-splice reads: 35813312 Splice reads: 17199099 Reads mapped in proper pairs: 53004788 Proper-paired reads map to different chrom:0