#================================================== #All numbers are READ count #================================================== Total records: 119034241 QC failed: 0 Optical/PCR duplicate: 64190365 Non primary hits 10604707 Unmapped reads: 3468956 mapq < mapq_cut (non-unique): 1955941 mapq >= mapq_cut (unique): 38814272 Read-1: 19409063 Read-2: 19405209 Reads map to '+': 19407054 Reads map to '-': 19407218 Non-splice reads: 29445175 Splice reads: 9369097 Reads mapped in proper pairs: 38805544 Proper-paired reads map to different chrom:0