#================================================== #All numbers are READ count #================================================== Total records: 113147451 QC failed: 0 Optical/PCR duplicate: 42448507 Non primary hits 6050849 Unmapped reads: 9068550 mapq < mapq_cut (non-unique): 2227692 mapq >= mapq_cut (unique): 53351853 Read-1: 26681306 Read-2: 26670547 Reads map to '+': 26675898 Reads map to '-': 26675955 Non-splice reads: 38481557 Splice reads: 14870296 Reads mapped in proper pairs: 53336700 Proper-paired reads map to different chrom:0