#================================================== #All numbers are READ count #================================================== Total records: 67125917 QC failed: 0 Optical/PCR duplicate: 18411739 Non primary hits 4066335 Unmapped reads: 2218915 mapq < mapq_cut (non-unique): 1747887 mapq >= mapq_cut (unique): 40681041 Read-1: 20342858 Read-2: 20338183 Reads map to '+': 20340402 Reads map to '-': 20340639 Non-splice reads: 28252570 Splice reads: 12428471 Reads mapped in proper pairs: 40673054 Proper-paired reads map to different chrom:0