#================================================== #All numbers are READ count #================================================== Total records: 94883368 QC failed: 0 Optical/PCR duplicate: 51167744 Non primary hits 6762756 Unmapped reads: 3302606 mapq < mapq_cut (non-unique): 1533002 mapq >= mapq_cut (unique): 32117260 Read-1: 16059796 Read-2: 16057464 Reads map to '+': 16058623 Reads map to '-': 16058637 Non-splice reads: 24525405 Splice reads: 7591855 Reads mapped in proper pairs: 32111710 Proper-paired reads map to different chrom:0