#================================================== #All numbers are READ count #================================================== Total records: 84817084 QC failed: 0 Optical/PCR duplicate: 24921848 Non primary hits 5026490 Unmapped reads: 7788733 mapq < mapq_cut (non-unique): 1998929 mapq >= mapq_cut (unique): 45081084 Read-1: 22544641 Read-2: 22536443 Reads map to '+': 22540511 Reads map to '-': 22540573 Non-splice reads: 30756418 Splice reads: 14324666 Reads mapped in proper pairs: 45069852 Proper-paired reads map to different chrom:0