#================================================== #All numbers are READ count #================================================== Total records: 84923073 QC failed: 0 Optical/PCR duplicate: 29129877 Non primary hits 5140401 Unmapped reads: 8454642 mapq < mapq_cut (non-unique): 1831700 mapq >= mapq_cut (unique): 40366453 Read-1: 20186193 Read-2: 20180260 Reads map to '+': 20183164 Reads map to '-': 20183289 Non-splice reads: 28805429 Splice reads: 11561024 Reads mapped in proper pairs: 40357596 Proper-paired reads map to different chrom:0