#================================================== #All numbers are READ count #================================================== Total records: 93505945 QC failed: 0 Optical/PCR duplicate: 30296286 Non primary hits 5845635 Unmapped reads: 10529167 mapq < mapq_cut (non-unique): 2036429 mapq >= mapq_cut (unique): 44798428 Read-1: 22403535 Read-2: 22394893 Reads map to '+': 22399262 Reads map to '-': 22399166 Non-splice reads: 32062966 Splice reads: 12735462 Reads mapped in proper pairs: 44786304 Proper-paired reads map to different chrom:0