#================================================== #All numbers are READ count #================================================== Total records: 96364259 QC failed: 0 Optical/PCR duplicate: 41551625 Non primary hits 6332493 Unmapped reads: 7747195 mapq < mapq_cut (non-unique): 1904894 mapq >= mapq_cut (unique): 38828052 Read-1: 19421179 Read-2: 19406873 Reads map to '+': 19413938 Reads map to '-': 19414114 Non-splice reads: 27551058 Splice reads: 11276994 Reads mapped in proper pairs: 38806880 Proper-paired reads map to different chrom:0