#================================================== #All numbers are READ count #================================================== Total records: 82653006 QC failed: 0 Optical/PCR duplicate: 29330333 Non primary hits 4126922 Unmapped reads: 14819606 mapq < mapq_cut (non-unique): 1423127 mapq >= mapq_cut (unique): 32953018 Read-1: 16480358 Read-2: 16472660 Reads map to '+': 16476457 Reads map to '-': 16476561 Non-splice reads: 23053984 Splice reads: 9899034 Reads mapped in proper pairs: 32942674 Proper-paired reads map to different chrom:0