#================================================== #All numbers are READ count #================================================== Total records: 110196702 QC failed: 0 Optical/PCR duplicate: 43126167 Non primary hits 6205154 Unmapped reads: 14309273 mapq < mapq_cut (non-unique): 2089521 mapq >= mapq_cut (unique): 44466587 Read-1: 22238717 Read-2: 22227870 Reads map to '+': 22233247 Reads map to '-': 22233340 Non-splice reads: 30566425 Splice reads: 13900162 Reads mapped in proper pairs: 44452324 Proper-paired reads map to different chrom:0