#================================================== #All numbers are READ count #================================================== Total records: 150695604 QC failed: 0 Optical/PCR duplicate: 61183703 Non primary hits 7136568 Unmapped reads: 27840528 mapq < mapq_cut (non-unique): 2282134 mapq >= mapq_cut (unique): 52252671 Read-1: 26135362 Read-2: 26117309 Reads map to '+': 26126343 Reads map to '-': 26126328 Non-splice reads: 35406691 Splice reads: 16845980 Reads mapped in proper pairs: 52229108 Proper-paired reads map to different chrom:0