#================================================== #All numbers are READ count #================================================== Total records: 91083189 QC failed: 0 Optical/PCR duplicate: 32154133 Non primary hits 14295749 Unmapped reads: 8477015 mapq < mapq_cut (non-unique): 2201135 mapq >= mapq_cut (unique): 33955157 Read-1: 16982208 Read-2: 16972949 Reads map to '+': 16977543 Reads map to '-': 16977614 Non-splice reads: 23742903 Splice reads: 10212254 Reads mapped in proper pairs: 33943012 Proper-paired reads map to different chrom:0