#================================================== #All numbers are READ count #================================================== Total records: 76063715 QC failed: 0 Optical/PCR duplicate: 26952864 Non primary hits 4810047 Unmapped reads: 7175313 mapq < mapq_cut (non-unique): 1615463 mapq >= mapq_cut (unique): 35510028 Read-1: 17757109 Read-2: 17752919 Reads map to '+': 17754895 Reads map to '-': 17755133 Non-splice reads: 24902454 Splice reads: 10607574 Reads mapped in proper pairs: 35503600 Proper-paired reads map to different chrom:0