#================================================== #All numbers are READ count #================================================== Total records: 85655613 QC failed: 0 Optical/PCR duplicate: 32183034 Non primary hits 5097141 Unmapped reads: 3129702 mapq < mapq_cut (non-unique): 1879846 mapq >= mapq_cut (unique): 43365890 Read-1: 21686333 Read-2: 21679557 Reads map to '+': 21682998 Reads map to '-': 21682892 Non-splice reads: 30747474 Splice reads: 12618416 Reads mapped in proper pairs: 43356658 Proper-paired reads map to different chrom:0